HL_6P4G_013

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4G_013 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1527

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6P4G|1|2|U|416
6P4G|1|2|C|417
6P4G|1|2|A|418
6P4G|1|2|G|419
6P4G|1|2|G|420
6P4G|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain K

uS4

Chain M

uS17

Chain X

uS8

Chain Y

uS12