HL_6P4G_017

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4G_017 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2716

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6P4G|1|2|U|538
6P4G|1|2|C|539
6P4G|1|2|U|540
6P4G|1|2|U|541
6P4G|1|2|U|542
6P4G|1|2|C|543
6P4G|1|2|G|544
6P4G|1|2|A|545

Current chains

Chain 2

18S rRNA

Nearby chains