HL_6P4G_024

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4G_024 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1671

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6P4G|1|2|A|957
6P4G|1|2|G|958
6P4G|1|2|G|959
6P4G|1|2|U|960
6P4G|1|2|G|961
6P4G|1|2|A|962
6P4G|1|2|A|963
6P4G|1|2|A|964
6P4G|1|2|U|965
6P4G|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11