HL_6P4H_040

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6P4H|1|2|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4H_040 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3368

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6P4H|1|2|U|885
6P4H|1|2|A|886
6P4H|1|2|U|887
6P4H|1|2|U|888
6P4H|1|2|U|889
6P4H|1|2|U|890
6P4H|1|2|G|891
6P4H|1|2|U|892
6P4H|1|2|U|893
6P4H|1|2|G|894
6P4H|1|2|G|895
6P4H|1|2|U|896
6P4H|1|2|U|897
6P4H|1|2|U|898
6P4H|1|2|U|899
6P4H|1|2|C|900
6P4H|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17