HL_6P5I_001

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAUUUCCAAUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_001 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3742

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6P5I|1|1|G|6444
6P5I|1|1|G|6445
6P5I|1|1|A|6446
6P5I|1|1|A|6447
6P5I|1|1|A|6448
6P5I|1|1|U|6449
6P5I|1|1|U|6450
6P5I|1|1|U|6451
6P5I|1|1|C|6452
6P5I|1|1|C|6453
6P5I|1|1|A|6454
6P5I|1|1|A|6455
6P5I|1|1|U|6456
6P5I|1|1|A|6457
6P5I|1|1|A|6458
6P5I|1|1|A|6459
6P5I|1|1|C|6460

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain AJ

uL11

Chain Ao

eL42