HL_6P5I_014

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6P5I|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_014 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.075

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6P5I|1|2|C|441
6P5I|1|2|C|442
6P5I|1|2|U|443
6P5I|1|2|G|444
6P5I|1|2|A|445
6P5I|1|2|G|446
6P5I|1|2|A|447
6P5I|1|2|A|448
6P5I|1|2|A|449
6P5I|1|2|C|450
6P5I|1|2|G|451
6P5I|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8