HL_6P5I_026

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_026 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.3554

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6P5I|1|2|A|1113
6P5I|1|2|U|1114
6P5I|1|2|U|1115
6P5I|1|2|C|1116
6P5I|1|2|C|1117
6P5I|1|2|C|1118
6P5I|1|2|A|1119
6P5I|1|2|U|1120

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain c

eS27