HL_6P5I_051

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGUCG

Length

7 nucleotides

Bulged bases

6P5I|1|5|C|523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_051 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3894

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6P5I|1|5|C|521
6P5I|1|5|C|522
6P5I|1|5|C|523
6P5I|1|5|G|638
6P5I|1|5|U|639
6P5I|1|5|C|640
6P5I|1|5|G|641

Current chains

Chain 5

28S rRNA

Nearby chains