HL_6P5I_092

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6P5I|1|5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_092 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1863

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5I|1|5|G|3757
6P5I|1|5|U|3758
6P5I|1|5|A|3759
6P5I|1|5|A|3760
6P5I|1|5|C|3761
6P5I|1|5|U|3762
6P5I|1|5|A|3763
6P5I|1|5|U|3764
6P5I|1|5|G|3765
6P5I|1|5|A|3766
6P5I|1|5|C|3767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain 2

Small subunit ribosomal RNA; SSU rRNA