HL_6P5I_102
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 6P5I|1|5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5I_102 not in the Motif Atlas
- Geometric match to HL_4V83_139
- Geometric discrepancy: 0.2758
- The information below is about HL_4V83_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53597.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
6P5I|1|5|U|4352
6P5I|1|5|U|4353
6P5I|1|5|U|4354
6P5I|1|5|G|4355
6P5I|1|5|G|4356
6P5I|1|5|G|4357
6P5I|1|5|U|4358
6P5I|1|5|U|4359
6P5I|1|5|U|4360
6P5I|1|5|U|4361
6P5I|1|5|A|4362
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain Aa
- uL15
- Chain Ai
- eL36
- Chain Ao
- eL42
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