HL_6P5I_103

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_103 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.135

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6P5I|1|5|C|4417
6P5I|1|5|G|4418
6P5I|1|5|U|4419
6P5I|1|5|U|4420
6P5I|1|5|C|4421
6P5I|1|5|A|4422
6P5I|1|5|U|4423
6P5I|1|5|A|4424
6P5I|1|5|G|4425

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AI

uL16

Chain Am

eL40