HL_6P5I_104

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6P5I|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_104 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0857

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6P5I|1|5|A|4474
6P5I|1|5|G|4475
6P5I|1|5|C|4476
6P5I|1|5|A|4477
6P5I|1|5|G|4478
6P5I|1|5|A|4479
6P5I|1|5|A|4480
6P5I|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AH

uL6

Chain Am

eL40