HL_6P5I_109

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6P5I|1|5|G|4694, 6P5I|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_109 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.0781

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6P5I|1|5|C|4688
6P5I|1|5|U|4689
6P5I|1|5|G|4690
6P5I|1|5|A|4691
6P5I|1|5|A|4692
6P5I|1|5|C|4693
6P5I|1|5|G|4694
6P5I|1|5|C|4695
6P5I|1|5|C|4696
6P5I|1|5|U|4697
6P5I|1|5|C|4698
6P5I|1|5|U|4699
6P5I|1|5|A|4700
6P5I|1|5|A|4701
6P5I|1|5|G|4702

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AH

uL6

Chain AO

uL13

Chain Am

eL40