HL_6P5J_005

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGUAACACA

Length

10 nucleotides

Bulged bases

6P5J|1|1|C|6589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|1|U|6583
6P5J|1|1|G|6584
6P5J|1|1|G|6585
6P5J|1|1|U|6586
6P5J|1|1|A|6587
6P5J|1|1|A|6588
6P5J|1|1|C|6589
6P5J|1|1|A|6590
6P5J|1|1|C|6591
6P5J|1|1|A|6592

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AI

uL16