6P5J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6P5J_001 | 1/1/6443:6461 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6P5J_002 | 1/1/6497:6502 | Mini UNCG | geometric HL_1ZBH_001 HL_56334.1 | |
| HL_6P5J_136 | 1/1/6521:6527 | No text annotation | ||
| HL_6P5J_004 | 1/1/6560:6570 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6P5J_005 | 1/1/6583:6592 | No text annotation | ||
| HL_6P5J_006 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6P5J_007 | 1/2/69:80 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_6P5J_137 | 1/2/145:174 | No text annotation | ||
| HL_6P5J_009 | 1/2/194:205 | No text annotation | ||
| HL_6P5J_010 | 1/2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6P5J_012 | 1/2/377:387 | No text annotation | ||
| HL_6P5J_013 | 1/2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6P5J_014 | 1/2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6P5J_015 | 1/2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6P5J_138 | 1/2/495:508 | No text annotation | ||
| HL_6P5J_139 | 1/2/534:550 | No text annotation | ||
| HL_6P5J_017 | 1/2/538:545 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_6P5J_018 | 1/2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6P5J_019 | 1/2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6P5J_022 | 1/2/884:902 | No text annotation | homologous HL_8P9A_208 NA | |
| HL_6P5J_023 | 1/2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6P5J_024 | 1/2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6P5J_025 | 1/2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6P5J_026 | 1/2/1113:1120 | No text annotation | ||
| HL_6P5J_027 | 1/2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6P5J_028 | 1/2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6P5J_029 | 1/2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6P5J_123 | 1/2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8P9A_216 HL_81538.2 | |
| HL_6P5J_031 | 1/2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6P5J_032 | 1/2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6P5J_034 | 1/2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6P5J_124 | 1/2/1562:1573 | No text annotation | ||
| HL_6P5J_035 | 1/2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6P5J_140 | 1/2/1614:1625 | No text annotation | homologous HL_8CRE_223 HL_67079.1 | |
| HL_6P5J_037 | 1/2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6P5J_039 | 1/2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6P5J_040 | 1/5/37:44 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_6P5J_041 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6P5J_042 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6P5J_043 | 1/5/131:137 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6P5J_044 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6P5J_045 | 1/5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6P5J_046 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6P5J_047 | 1/5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6P5J_048 | 1/5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6P5J_049 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6P5J_050 | 1/5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_6P5J_051 | 1/5/521:641 | No text annotation | ||
| HL_6P5J_141 | 1/5/757:905 | No text annotation | ||
| HL_6P5J_053 | 1/5/962:970 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6P5J_054 | 1/5/990:1065 | No text annotation | ||
| HL_6P5J_142 | 1/5/1177:1184 | No text annotation | ||
| HL_6P5J_056 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6P5J_128 | 1/5/1364:1373 | No text annotation | ||
| HL_6P5J_058 | 1/5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6P5J_059 | 1/5/1404:1413 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6P5J_060 | 1/5/1436:1448 | Pseudoknot geometry | geometric HL_1ZCI_002 HL_94376.1 | |
| HL_6P5J_061 | 1/5/1479:1486 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_6P5J_062 | 1/5/1560:1567 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6P5J_063 | 1/5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6P5J_064 | 1/5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6P5J_065 | 1/5/1675:1680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6P5J_130 | 1/5/1753:1777 | No text annotation | ||
| HL_6P5J_066 | 1/5/1757:1775 | No text annotation | ||
| HL_6P5J_067 | 1/5/1816:1823 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6P5J_068 | 1/5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6P5J_069 | 1/5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6P5J_143 | 1/5/1957:2026 | No text annotation | ||
| HL_6P5J_070 | 1/5/2005:2014 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6P5J_071 | 1/5/2087:2270 | No text annotation | ||
| HL_6P5J_072 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6P5J_073 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6P5J_074 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6P5J_075 | 1/5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6P5J_076 | 1/5/2487:2491 | No text annotation | ||
| HL_6P5J_077 | 1/5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6P5J_078 | 1/5/2561:2566 | GNRA with GA tSW pair | geometric HL_5VW1_003 HL_37824.8 | |
| HL_6P5J_079 | 1/5/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6P5J_080 | 1/5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6P5J_081 | 1/5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_6P5J_133 | 1/5/2704:2712 | No text annotation | ||
| HL_6P5J_082 | 1/5/2705:2710 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6P5J_083 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6P5J_084 | 1/5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6P5J_085 | 1/5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6P5J_086 | 1/5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6P5J_144 | 1/5/2901:3598 | No text annotation | ||
| HL_6P5J_088 | 1/5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6P5J_089 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6P5J_090 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6P5J_091 | 1/5/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6P5J_092 | 1/5/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6P5J_093 | 1/5/3796:3804 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6P5J_094 | 1/5/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6P5J_095 | 1/5/3973:4038 | No text annotation | ||
| HL_6P5J_145 | 1/5/4135:4149 | No text annotation | ||
| HL_6P5J_096 | 1/5/4138:4147 | No text annotation | ||
| HL_6P5J_097 | 1/5/4193:4201 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6P5J_098 | 1/5/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6P5J_099 | 1/5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6P5J_100 | 1/5/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6P5J_101 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6P5J_102 | 1/5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6P5J_103 | 1/5/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6P5J_104 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6P5J_105 | 1/5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6P5J_106 | 1/5/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6P5J_107 | 1/5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6P5J_108 | 1/5/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6P5J_109 | 1/5/4646:4651 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6P5J_110 | 1/5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6P5J_111 | 1/5/4775:4860 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_6P5J_112 | 1/5/4904:4918 | No text annotation | ||
| HL_6P5J_113 | 1/5/4975:4983 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_6P5J_114 | 1/5/5021:5028 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6P5J_135 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6P5J_115 | 1/7/36:41 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6P5J_116 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6P5J_117 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6P5J_119 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6P5J_120 | 1/8/121:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6P5J_003 | No text annotation | ||
| HL_6P5J_008 | No text annotation | ||
| HL_6P5J_011 | No text annotation | ||
| HL_6P5J_016 | No text annotation | ||
| HL_6P5J_121 | No text annotation | ||
| HL_6P5J_020 | No text annotation | ||
| HL_6P5J_021 | No text annotation | ||
| HL_6P5J_122 | No text annotation | ||
| HL_6P5J_030 | No text annotation | ||
| HL_6P5J_033 | No text annotation | ||
| HL_6P5J_036 | No text annotation | ||
| HL_6P5J_038 | tRNA D-loop | ||
| HL_6P5J_125 | No text annotation | ||
| HL_6P5J_126 | No text annotation | ||
| HL_6P5J_052 | No text annotation | ||
| HL_6P5J_127 | No text annotation | ||
| HL_6P5J_055 | No text annotation | ||
| HL_6P5J_057 | No text annotation | ||
| HL_6P5J_129 | No text annotation | ||
| HL_6P5J_131 | No text annotation | ||
| HL_6P5J_132 | No text annotation | ||
| HL_6P5J_087 | No text annotation | ||
| HL_6P5J_134 | No text annotation | ||
| HL_6P5J_118 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6P5J_001 | 1/1/6425:6433, 1/1/6471:6475 | No text annotation | ||
| IL_6P5J_240 | 1/1/6425:6437, 1/1/6467:6475 | No text annotation | ||
| IL_6P5J_002 | 1/1/6433:6437, 1/1/6467:6471 | No text annotation | ||
| IL_6P5J_277 | 1/1/6492:6494, 1/1/6505:6512 | No text annotation | ||
| IL_6P5J_004 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_87907.2 | |
| IL_6P5J_005 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6P5J_006 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6P5J_007 | 1/2/41:47, 1/2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6P5J_008 | 1/2/49:53, 1/2/474:477 | No text annotation | ||
| IL_6P5J_009 | 1/2/108:112, 1/2/349:353 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6P5J_010 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6P5J_011 | 1/2/116:121, 1/2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6P5J_278 | 1/2/188:193, 1/2/206:211 | No text annotation | ||
| IL_6P5J_014 | 1/2/316:321, 1/2/330:334 | No text annotation | ||
| IL_6P5J_015 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6P5J_016 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6P5J_017 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6P5J_018 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6P5J_019 | 1/2/459:461, 1/2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6P5J_279 | 1/2/487:495, 1/2/508:512 | No text annotation | ||
| IL_6P5J_020 | 1/2/528:532, 1/2/552:557 | No text annotation | ||
| IL_6P5J_021 | 1/2/533:538, 1/2/545:551 | No text annotation | ||
| IL_6P5J_022 | 1/2/599:608, 1/2/635:637 | No text annotation | ||
| IL_6P5J_023 | 1/2/611:617, 1/2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6P5J_024 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6P5J_025 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_6P5J_026 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6P5J_027 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6P5J_280 | 1/2/802:803, 1/2/860:863 | No text annotation | homologous IL_8CRE_428 IL_68140.4 | |
| IL_6P5J_029 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6P5J_030 | 1/2/807:816, 1/2/848:856 | No text annotation | ||
| IL_6P5J_031 | 1/2/816:831, 1/2/843:848 | No text annotation | ||
| IL_6P5J_032 | 1/2/876:879, 1/2/907:910 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6P5J_033 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_6P5J_034 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs | homologous IL_4V88_429 NA | |
| IL_6P5J_035 | 1/2/928:931, 1/2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6P5J_036 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6P5J_037 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6P5J_038 | 1/2/952:956, 1/2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6P5J_039 | 1/2/1042:1051, 1/2/1067:1073 | No text annotation | ||
| IL_6P5J_040 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6P5J_041 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6P5J_245 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6P5J_042 | 1/2/1101:1103, 1/2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_6P5J_281 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_9DFE_031 IL_51454.3 | |
| IL_6P5J_044 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6P5J_045 | 1/2/1203:1204, 1/2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6P5J_046 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6P5J_047 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6P5J_282 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8CRE_446 IL_87907.2 | |
| IL_6P5J_049 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6P5J_283 | 1/2/1237:1266, 1/2/1516:1520 | No text annotation | ||
| IL_6P5J_284 | 1/2/1280:1294, 1/2/1305:1317 | No text annotation | ||
| IL_6P5J_050 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6P5J_051 | 1/2/1328:1335, 1/2/1492:1501 | No text annotation | ||
| IL_6P5J_052 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6P5J_053 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6P5J_054 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6P5J_055 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
| IL_6P5J_056 | 1/2/1402:1405, 1/2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6P5J_285 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_6P5J_058 | 1/2/1536:1539, 1/2/1594:1597 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6P5J_286 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_6P5J_059 | 1/2/1550:1558, 1/2/1577:1582 | 180 degree turn | geometric IL_4LFB_052 IL_11344.2 | |
| IL_6P5J_287 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_07785.1 | |
| IL_6P5J_061 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6P5J_062 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6P5J_063 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6P5J_064 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6P5J_065 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_6P5J_066 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6P5J_067 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6P5J_068 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6P5J_069 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6P5J_070 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6P5J_071 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_6P5J_254 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_6P5J_073 | 1/2/1750:1754, 1/2/1778:1784 | No text annotation | ||
| IL_6P5J_255 | 1/2/1750:1759, 1/2/1773:1784 | No text annotation | ||
| IL_6P5J_074 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6P5J_256 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_89505.4 | |
| IL_6P5J_076 | 1/5/16:18, 1/8/139:141 | Isolated cWH basepair | geometric IL_4J50_001 IL_10167.6 | |
| IL_6P5J_077 | 1/5/26:27, 1/5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6P5J_078 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_6P5J_079 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6P5J_080 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases | geometric IL_4LFB_007 IL_33761.2 | |
| IL_6P5J_257 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_6P5J_081 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_4V9F_009 IL_92634.2 | |
| IL_6P5J_082 | 1/5/125:127, 1/5/141:144 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6P5J_083 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_6P5J_084 | 1/5/178:181, 1/5/256:258 | No text annotation | ||
| IL_6P5J_288 | 1/5/182:189, 1/5/252:255 | No text annotation | ||
| IL_6P5J_086 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6P5J_087 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6P5J_088 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6P5J_089 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6P5J_090 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6P5J_091 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6P5J_092 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
| IL_6P5J_093 | 1/5/448:450, 1/5/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_61258.15 | |
| IL_6P5J_094 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6P5J_260 | 1/5/459:464, 1/5/691:697 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6P5J_095 | 1/5/461:464, 1/5/691:694 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6P5J_096 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
| IL_6P5J_097 | 1/5/480:485, 1/5/671:674 | No text annotation | ||
| IL_6P5J_098 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6P5J_099 | 1/5/491:493, 1/5/661:662 | No text annotation | ||
| IL_6P5J_100 | 1/5/497:504, 1/5/654:657 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_85033.2 | |
| IL_6P5J_101 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6P5J_102 | 1/5/517:520, 1/5/642:644 | No text annotation | ||
| IL_6P5J_103 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6P5J_262 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_84476.1 | |
| IL_6P5J_105 | 1/5/727:731, 1/5/938:939 | Single stack bend with SAM intercalation | geometric IL_2QWY_008 IL_90729.1 | |
| IL_6P5J_106 | 1/5/732:735, 1/5/927:937 | No text annotation | ||
| IL_6P5J_107 | 1/5/737:743, 1/5/920:925 | No text annotation | ||
| IL_6P5J_263 | 1/5/737:754, 1/5/908:925 | No text annotation | ||
| IL_6P5J_108 | 1/5/745:754, 1/5/908:918 | No text annotation | ||
| IL_6P5J_109 | 1/5/1074:1076, 1/5/1234:1236 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_87907.2 | |
| IL_6P5J_289 | 1/5/1076:1080, 1/5/1219:1234 | No text annotation | ||
| IL_6P5J_111 | 1/5/1082:1084, 1/5/1213:1217 | No text annotation | geometric IL_3R1D_012 NA | |
| IL_6P5J_112 | 1/5/1086:1087, 1/5/1209:1211 | No text annotation | ||
| IL_6P5J_113 | 1/5/1095:1098, 1/5/1197:1201 | No text annotation | ||
| IL_6P5J_290 | 1/5/1096:1100, 1/5/1194:1200 | No text annotation | ||
| IL_6P5J_114 | 1/5/1098:1169, 1/5/1192:1197 | No text annotation | ||
| IL_6P5J_291 | 1/5/1173:1175, 1/5/1186:1188 | Isolated cWH basepair | geometric IL_3R1E_001 IL_10167.6 | |
| IL_6P5J_116 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_6P5J_265 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_6P5J_117 | 1/5/1360:1361, 1/5/1376:1379 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6P5J_118 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6P5J_119 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_6P5J_120 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6P5J_121 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6P5J_122 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_6P5J_123 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6P5J_124 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4LVW_002 IL_00225.14 | |
| IL_6P5J_125 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6P5J_126 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6P5J_127 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6P5J_128 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_6P5J_129 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6P5J_130 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_6P5J_131 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_6P5J_132 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6P5J_133 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6P5J_134 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_6P5J_135 | 1/5/1739:1744, 1/5/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6P5J_266 | 1/5/1746:1749, 1/5/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_6P5J_137 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_6P5J_138 | 1/5/1753:1757, 1/5/1775:1777 | No text annotation | ||
| IL_6P5J_139 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6P5J_140 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6P5J_141 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6P5J_142 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6P5J_143 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_6P5J_144 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_6P5J_145 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6P5J_146 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6P5J_147 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6P5J_148 | 1/5/1969:2005, 1/5/2014:2018 | No text annotation | ||
| IL_6P5J_149 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6P5J_150 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6P5J_151 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6P5J_152 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6P5J_153 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_6P5J_154 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6P5J_292 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_6P5J_156 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6P5J_268 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_6P5J_158 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_6P5J_159 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6P5J_160 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_6P5J_161 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6P5J_162 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_6P5J_163 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.14 | |
| IL_6P5J_293 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
| IL_6P5J_165 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_6P5J_294 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_22829.2 | |
| IL_6P5J_167 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6P5J_168 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6P5J_269 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6P5J_169 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6P5J_170 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6P5J_171 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_6P5J_295 | 1/5/2895:2897, 1/5/3602:3606 | No text annotation | ||
| IL_6P5J_173 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6P5J_174 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6P5J_175 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6P5J_176 | 1/5/3704:3705, 1/5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6P5J_177 | 1/5/3708:3714, 1/5/3739:3742 | No text annotation | ||
| IL_6P5J_178 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6P5J_179 | 1/5/3780:3781, 1/5/3811:3814 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_6P5J_180 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6P5J_181 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6P5J_182 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6P5J_183 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6P5J_184 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6P5J_185 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6P5J_270 | 1/5/3948:3969, 1/5/4052:4065 | No text annotation | ||
| IL_6P5J_271 | 1/5/3948:3973, 1/5/4038:4065 | No text annotation | ||
| IL_6P5J_187 | 1/5/3969:3973, 1/5/4038:4052 | No text annotation | ||
| IL_6P5J_188 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6P5J_272 | 1/5/4091:4129, 1/5/4155:4158 | No text annotation | ||
| IL_6P5J_189 | 1/5/4100:4101, 1/5/4107:4109 | No text annotation | ||
| IL_6P5J_190 | 1/5/4134:4138, 1/5/4147:4150 | No text annotation | ||
| IL_6P5J_191 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6P5J_192 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6P5J_193 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_6P5J_194 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6P5J_273 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_6P5J_196 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6P5J_197 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6P5J_198 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6P5J_199 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_6P5J_200 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6P5J_201 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6P5J_202 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_6P5J_203 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6P5J_204 | 1/5/4466:4468, 1/5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6P5J_274 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_6P5J_205 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation | ||
| IL_6P5J_206 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6P5J_207 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6P5J_208 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6P5J_209 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_6P5J_210 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6P5J_211 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6P5J_212 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_6P5J_213 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6P5J_214 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3D0M_001 IL_10167.6 | |
| IL_6P5J_215 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6P5J_216 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6P5J_217 | 1/5/4735:4737, 1/5/4962:4965 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6P5J_218 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation | ||
| IL_6P5J_219 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6P5J_220 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_6P5J_275 | 1/5/4769:4774, 1/5/4861:4865 | No text annotation | ||
| IL_6P5J_222 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_6P5J_223 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation | ||
| IL_6P5J_224 | 1/5/4896:4904, 1/5/4918:4924 | No text annotation | ||
| IL_6P5J_225 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6P5J_226 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_6P5J_227 | 1/5/4996:4997, 1/5/5053:5055 | No text annotation | ||
| IL_6P5J_228 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6P5J_229 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_6P5J_230 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6P5J_231 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_6P5J_232 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6P5J_233 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6P5J_296 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_6P5J_235 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6P5J_236 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_6P5J_237 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_6P5J_238 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6P5J_239 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6P5J_003 | No text annotation | ||
| IL_6P5J_241 | No text annotation | ||
| IL_6P5J_242 | No text annotation | ||
| IL_6P5J_012 | No text annotation | ||
| IL_6P5J_013 | No text annotation | ||
| IL_6P5J_028 | Minor groove platform with extra cWW | ||
| IL_6P5J_243 | Partly complementary | ||
| IL_6P5J_244 | Partly complementary | ||
| IL_6P5J_043 | No text annotation | ||
| IL_6P5J_246 | No text annotation | ||
| IL_6P5J_048 | Tandem non-canonical cWW pairs | ||
| IL_6P5J_247 | No text annotation | ||
| IL_6P5J_248 | No text annotation | ||
| IL_6P5J_249 | No text annotation | ||
| IL_6P5J_250 | Tandem non-canonical cWW pairs | ||
| IL_6P5J_251 | No text annotation | ||
| IL_6P5J_057 | Isolated non-canonical cWW pair | ||
| IL_6P5J_252 | No text annotation | ||
| IL_6P5J_253 | No text annotation | ||
| IL_6P5J_060 | Tandem non-canonical cWW pairs | ||
| IL_6P5J_072 | No text annotation | ||
| IL_6P5J_075 | Isolated non-canonical cWW pair | ||
| IL_6P5J_258 | No text annotation | ||
| IL_6P5J_259 | No text annotation | ||
| IL_6P5J_085 | No text annotation | ||
| IL_6P5J_261 | No text annotation | ||
| IL_6P5J_104 | Isolated non-canonical cWW pair | ||
| IL_6P5J_110 | No text annotation | ||
| IL_6P5J_264 | No text annotation | ||
| IL_6P5J_115 | No text annotation | ||
| IL_6P5J_136 | No text annotation | ||
| IL_6P5J_267 | No text annotation | ||
| IL_6P5J_155 | No text annotation | ||
| IL_6P5J_157 | No text annotation | ||
| IL_6P5J_164 | No text annotation | ||
| IL_6P5J_166 | No text annotation | ||
| IL_6P5J_172 | No text annotation | ||
| IL_6P5J_186 | Isolated non-canonical cWW pair | ||
| IL_6P5J_195 | No text annotation | ||
| IL_6P5J_221 | No text annotation | ||
| IL_6P5J_276 | No text annotation | ||
| IL_6P5J_234 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6P5J_001 | 1/1/6552:6555, 1/1/6575:6577, 1/1/6598:6601 | No text annotation | ||
| J3_6P5J_002 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6P5J_031 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_6P5J_003 | 1/2/682:685, 1/2/917:922, 1/2/1022:1023 | No text annotation | ||
| J3_6P5J_004 | 1/2/937:941, 1/2/985:993, 1/2/1000:1005 | No text annotation | ||
| J3_6P5J_005 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
| J3_6P5J_006 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6P5J_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6P5J_008 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6P5J_009 | 1/2/1270:1277, 1/2/1320:1324, 1/2/1504:1512 | No text annotation | ||
| J3_6P5J_010 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6P5J_011 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6P5J_012 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_6P5J_013 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6P5J_014 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_6P5J_033 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6P5J_015 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6P5J_034 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6P5J_041 | 1/5/451:455, 1/5/701:705, 1/5/1292:1296 | No text annotation | ||
| J3_6P5J_016 | 1/5/983:985, 1/5/1070:1074, 1/5/1236:1273 | No text annotation | ||
| J3_6P5J_017 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6P5J_018 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6P5J_019 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6P5J_020 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6P5J_021 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6P5J_042 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_8CRE_015 J3_31965.2 | |
| J3_6P5J_037 | 1/5/2451:2456, 1/5/2465:2481, 1/5/2497:2508 | No text annotation | ||
| J3_6P5J_022 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation | ||
| J3_6P5J_023 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6P5J_038 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6P5J_024 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_89368.5 | |
| J3_6P5J_025 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6P5J_026 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6P5J_027 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6P5J_039 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_6P5J_028 | 1/5/4970:4972, 1/5/4986:4992, 1/5/5059:5063 | No text annotation | ||
| J3_6P5J_043 | 1/5/4970:4975, 1/5/4983:4991, 1/5/5060:5063 | No text annotation | ||
| J3_6P5J_029 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6P5J_030 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_6P5J_001 | 1/2/30:34, 1/2/521:532, 1/2/552:595, 1/2/641:644 | No text annotation | ||
| J4_6P5J_002 | 1/2/53:96, 1/2/434:436, 1/2/457:461, 1/2/468:474 | No text annotation | ||
| J4_6P5J_003 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6P5J_004 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6P5J_005 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6P5J_006 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_6P5J_007 | 1/5/712:713, 1/5/955:961, 1/5/971:978, 1/5/1278:1284 | No text annotation | ||
| J4_6P5J_008 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_6P5J_009 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6P5J_010 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_6P5J_011 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6P5J_012 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3780, 1/5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6P5J_013 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_6P5J_014 | 1/5/4231:4235, 1/5/4289:4293, 1/5/4317:4319, 1/5/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6P5J_015 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J5_6P5J_001 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_6P5J_002 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6P5J_003 | 1/5/2406:2410, 1/5/2434:2446, 1/5/2514:2519, 1/5/2536:2539, 1/5/2777:2784 | No text annotation | ||
| J5_6P5J_004 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6P5J_007 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_6P5J_006 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6P5J_001 | 1/5/21:27, 1/5/55:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_6P5J_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1401, 1/5/1416:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J6_6P5J_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_6P5J_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6P5J_032 | No text annotation | ||
| J3_6P5J_035 | No text annotation | ||
| J3_6P5J_036 | No text annotation | ||
| J3_6P5J_040 | No text annotation | ||
| J5_6P5J_005 | No text annotation |
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