HL_6P5J_020

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGCGGCCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|G|692
6P5J|1|2|A|693
6P5J|1|2|G|694
6P5J|1|2|C|695
6P5J|1|2|G|696
6P5J|1|2|G|697
6P5J|1|2|C|729
6P5J|1|2|C|730
6P5J|1|2|G|731
6P5J|1|2|U|732
6P5J|1|2|C|733
6P5J|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain X

uS8