HL_6P5J_022

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_022 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.5884

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|C|884
6P5J|1|2|U|885
6P5J|1|2|A|886
6P5J|1|2|U|887
6P5J|1|2|U|888
6P5J|1|2|U|889
6P5J|1|2|U|890
6P5J|1|2|G|891
6P5J|1|2|U|892
6P5J|1|2|U|893
6P5J|1|2|G|894
6P5J|1|2|G|895
6P5J|1|2|U|896
6P5J|1|2|U|897
6P5J|1|2|U|898
6P5J|1|2|U|899
6P5J|1|2|C|900
6P5J|1|2|G|901
6P5J|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17