HL_6P5J_036
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUGCAAUUAUUC
- Length
- 14 nucleotides
- Bulged bases
- 6P5J|1|2|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5J_036 not in the Motif Atlas
- Geometric match to HL_6ZDU_001
- Geometric discrepancy: 0.3472
- The information below is about HL_6ZDU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6P5J|1|2|G|1613
6P5J|1|2|A|1614
6P5J|1|2|U|1615
6P5J|1|2|U|1616
6P5J|1|2|G|1617
6P5J|1|2|C|1618
6P5J|1|2|A|1619
6P5J|1|2|A|1620
6P5J|1|2|U|1621
6P5J|1|2|U|1622
6P5J|1|2|A|1623
6P5J|1|2|U|1624
6P5J|1|2|U|1625
6P5J|1|2|C|1626
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- uS19
- Chain T
- uS13
- Chain U
- eS19
- Chain e
- eS29
Coloring options: