HL_6P5J_044

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6P5J|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_044 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3382

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5J|1|5|U|204
6P5J|1|5|C|205
6P5J|1|5|U|206
6P5J|1|5|G|207
6P5J|1|5|A|208
6P5J|1|5|U|209
6P5J|1|5|C|210
6P5J|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AY

uL24

Chain Ae

eL32