HL_6P5J_070

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

6P5J|1|5|A|2009

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_070 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.333

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6P5J|1|5|G|2005
6P5J|1|5|U|2006
6P5J|1|5|G|2007
6P5J|1|5|U|2008
6P5J|1|5|A|2009
6P5J|1|5|A|2010
6P5J|1|5|C|2011
6P5J|1|5|A|2012
6P5J|1|5|A|2013
6P5J|1|5|C|2014

Current chains

Chain 5

28S rRNA

Nearby chains