3D structure

PDB id
6P5J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUGGGUUUUA
Length
11 nucleotides
Bulged bases
6P5J|1|5|U|4354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5J_103 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2637
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6P5J|1|5|U|4352
6P5J|1|5|U|4353
6P5J|1|5|U|4354
6P5J|1|5|G|4355
6P5J|1|5|G|4356
6P5J|1|5|G|4357
6P5J|1|5|U|4358
6P5J|1|5|U|4359
6P5J|1|5|U|4360
6P5J|1|5|U|4361
6P5J|1|5|A|4362

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AL
eL13
Chain Aa
uL15
Chain Ai
eL36
Chain Ao
eL42

Coloring options:


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