HL_6P5J_123

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6P5J|1|2|U|1300, 6P5J|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_123 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.4404

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6P5J|1|2|A|1295
6P5J|1|2|U|1296
6P5J|1|2|U|1297
6P5J|1|2|G|1298
6P5J|1|2|A|1299
6P5J|1|2|U|1300
6P5J|1|2|A|1301
6P5J|1|2|G|1302
6P5J|1|2|C|1303
6P5J|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

eS31