HL_6P5J_125

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGCGGCGGG

Length

11 nucleotides

Bulged bases

6P5J|1|5|G|134, 6P5J|1|5|G|135, 6P5J|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|C|129
6P5J|1|5|C|130
6P5J|1|5|C|131
6P5J|1|5|G|132
6P5J|1|5|C|133
6P5J|1|5|G|134
6P5J|1|5|G|135
6P5J|1|5|C|136
6P5J|1|5|G|137
6P5J|1|5|G|138
6P5J|1|5|G|139

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AN

eL15

Chain Ah

eL35

Chain Aj

eL37