HL_6P5J_129

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGCCGCC

Length

9 nucleotides

Bulged bases

6P5J|1|5|G|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_129 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3321

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6P5J|1|5|G|1403
6P5J|1|5|G|1404
6P5J|1|5|C|1405
6P5J|1|5|G|1409
6P5J|1|5|C|1410
6P5J|1|5|C|1411
6P5J|1|5|G|1412
6P5J|1|5|C|1413
6P5J|1|5|C|1414

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AL

eL13

Chain Aa

uL15