HL_6P5J_130

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

6P5J|1|5|C|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|G|1753
6P5J|1|5|U|1754
6P5J|1|5|C|1755
6P5J|1|5|U|1756
6P5J|1|5|U|1757
6P5J|1|5|G|1758
6P5J|1|5|G|1759
6P5J|1|5|G|1760
6P5J|1|5|G|1761
6P5J|1|5|C|1762
6P5J|1|5|C|1763
6P5J|1|5|G|1764
6P5J|1|5|A|1765
6P5J|1|5|A|1766
6P5J|1|5|A|1767
6P5J|1|5|C|1768
6P5J|1|5|G|1769
6P5J|1|5|A|1770
6P5J|1|5|U|1771
6P5J|1|5|C|1772
6P5J|1|5|U|1773
6P5J|1|5|C|1774
6P5J|1|5|A|1775
6P5J|1|5|A|1776
6P5J|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain AD

uL18

Chain AI

uL16

Chain Q

uS19