HL_6P5J_131
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAUAGACAGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAU
- Length
- 72 nucleotides
- Bulged bases
- 6P5J|1|5|U|1959, 6P5J|1|5|A|1960, 6P5J|1|5|U|2008, 6P5J|1|5|A|2009, 6P5J|1|5|A|2013
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|A|1956
6P5J|1|5|U|1957
6P5J|1|5|A|1958
6P5J|1|5|U|1959
6P5J|1|5|A|1960
6P5J|1|5|G|1961
6P5J|1|5|A|1962
6P5J|1|5|C|1963
6P5J|1|5|A|1964
6P5J|1|5|G|1965
6P5J|1|5|C|1966
6P5J|1|5|A|1967
6P5J|1|5|G|1968
6P5J|1|5|G|1969
6P5J|1|5|A|1970
6P5J|1|5|U|1971
6P5J|1|5|G|1972
6P5J|1|5|G|1973
6P5J|1|5|U|1974
6P5J|1|5|G|1975
6P5J|1|5|G|1976
6P5J|1|5|C|1977
6P5J|1|5|C|1978
6P5J|1|5|A|1979
6P5J|1|5|U|1980
6P5J|1|5|G|1981
6P5J|1|5|G|1982
6P5J|1|5|A|1983
6P5J|1|5|A|1984
6P5J|1|5|G|1985
6P5J|1|5|U|1986
6P5J|1|5|C|1987
6P5J|1|5|G|1988
6P5J|1|5|G|1989
6P5J|1|5|A|1990
6P5J|1|5|A|1991
6P5J|1|5|U|1992
6P5J|1|5|C|1993
6P5J|1|5|C|1994
6P5J|1|5|G|1995
6P5J|1|5|C|1996
6P5J|1|5|U|1997
6P5J|1|5|A|1998
6P5J|1|5|A|1999
6P5J|1|5|G|2000
6P5J|1|5|G|2001
6P5J|1|5|A|2002
6P5J|1|5|G|2003
6P5J|1|5|U|2004
6P5J|1|5|G|2005
6P5J|1|5|U|2006
6P5J|1|5|G|2007
6P5J|1|5|U|2008
6P5J|1|5|A|2009
6P5J|1|5|A|2010
6P5J|1|5|C|2011
6P5J|1|5|A|2012
6P5J|1|5|A|2013
6P5J|1|5|C|2014
6P5J|1|5|U|2015
6P5J|1|5|C|2016
6P5J|1|5|A|2017
6P5J|1|5|C|2018
6P5J|1|5|C|2019
6P5J|1|5|U|2020
6P5J|1|5|G|2021
6P5J|1|5|C|2022
6P5J|1|5|C|2023
6P5J|1|5|G|2024
6P5J|1|5|A|2025
6P5J|1|5|A|2026
6P5J|1|5|U|2027
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AI
- uL16
- Chain Am
- eL40
Coloring options: