HL_6P5J_137

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAACUGUGGUAAUUCUAGAGCUAAUAC

Length

30 nucleotides

Bulged bases

6P5J|1|2|A|158, 6P5J|1|2|U|161, 6P5J|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|G|145
6P5J|1|2|G|146
6P5J|1|2|A|147
6P5J|1|2|U|148
6P5J|1|2|A|149
6P5J|1|2|A|150
6P5J|1|2|C|151
6P5J|1|2|U|152
6P5J|1|2|G|153
6P5J|1|2|U|154
6P5J|1|2|G|155
6P5J|1|2|G|156
6P5J|1|2|U|157
6P5J|1|2|A|158
6P5J|1|2|A|159
6P5J|1|2|U|160
6P5J|1|2|U|161
6P5J|1|2|C|162
6P5J|1|2|U|163
6P5J|1|2|A|164
6P5J|1|2|G|165
6P5J|1|2|A|166
6P5J|1|2|G|167
6P5J|1|2|C|168
6P5J|1|2|U|169
6P5J|1|2|A|170
6P5J|1|2|A|171
6P5J|1|2|U|172
6P5J|1|2|A|173
6P5J|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24