HL_6P5J_138

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCCGACCCGGGGA

Length

14 nucleotides

Bulged bases

6P5J|1|2|A|500, 6P5J|1|2|C|502, 6P5J|1|2|C|503, 6P5J|1|2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|U|495
6P5J|1|2|C|496
6P5J|1|2|C|497
6P5J|1|2|C|498
6P5J|1|2|G|499
6P5J|1|2|A|500
6P5J|1|2|C|501
6P5J|1|2|C|502
6P5J|1|2|C|503
6P5J|1|2|G|504
6P5J|1|2|G|505
6P5J|1|2|G|506
6P5J|1|2|G|507
6P5J|1|2|A|508

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24