Loop HL_6P5J

3D structure

PDB id: 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UAUAGACAGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA
Length: 70 nucleotides
Bulged bases: 6P5J|1|5|U|1959, 6P5J|1|5|A|1960, 6P5J|1|5|U|2008, 6P5J|1|5|A|2009, 6P5J|1|5|A|2013
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6P5J|1|5|U|1957
6P5J|1|5|A|1958
6P5J|1|5|U|1959
6P5J|1|5|A|1960
6P5J|1|5|G|1961
6P5J|1|5|A|1962
6P5J|1|5|C|1963
6P5J|1|5|A|1964
6P5J|1|5|G|1965
6P5J|1|5|C|1966
6P5J|1|5|A|1967
6P5J|1|5|G|1968
6P5J|1|5|G|1969
6P5J|1|5|A|1970
6P5J|1|5|U|1971
6P5J|1|5|G|1972
6P5J|1|5|G|1973
6P5J|1|5|U|1974
6P5J|1|5|G|1975
6P5J|1|5|G|1976
6P5J|1|5|C|1977
6P5J|1|5|C|1978
6P5J|1|5|A|1979
6P5J|1|5|U|1980
6P5J|1|5|G|1981
6P5J|1|5|G|1982
6P5J|1|5|A|1983
6P5J|1|5|A|1984
6P5J|1|5|G|1985
6P5J|1|5|U|1986
6P5J|1|5|C|1987
6P5J|1|5|G|1988
6P5J|1|5|G|1989
6P5J|1|5|A|1990
6P5J|1|5|A|1991
6P5J|1|5|U|1992
6P5J|1|5|C|1993
6P5J|1|5|C|1994
6P5J|1|5|G|1995
6P5J|1|5|C|1996
6P5J|1|5|U|1997
6P5J|1|5|A|1998
6P5J|1|5|A|1999
6P5J|1|5|G|2000
6P5J|1|5|G|2001
6P5J|1|5|A|2002
6P5J|1|5|G|2003
6P5J|1|5|U|2004
6P5J|1|5|G|2005
6P5J|1|5|U|2006
6P5J|1|5|G|2007
6P5J|1|5|U|2008
6P5J|1|5|A|2009
6P5J|1|5|A|2010
6P5J|1|5|C|2011
6P5J|1|5|A|2012
6P5J|1|5|A|2013
6P5J|1|5|C|2014
6P5J|1|5|U|2015
6P5J|1|5|C|2016
6P5J|1|5|A|2017
6P5J|1|5|C|2018
6P5J|1|5|C|2019
6P5J|1|5|U|2020
6P5J|1|5|G|2021
6P5J|1|5|C|2022
6P5J|1|5|C|2023
6P5J|1|5|G|2024
6P5J|1|5|A|2025
6P5J|1|5|A|2026

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain Am: eL40

HL_6P5J_143