3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUUAGAGGAAAUUUCCAAUAAACUCUGGU
Length
29 nucleotides
Bulged bases
6P5K|1|1|U|6451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5K|1|1|A|6438
6P5K|1|1|U|6439
6P5K|1|1|U|6440
6P5K|1|1|A|6441
6P5K|1|1|G|6442
6P5K|1|1|A|6443
6P5K|1|1|G|6444
6P5K|1|1|G|6445
6P5K|1|1|A|6446
6P5K|1|1|A|6447
6P5K|1|1|A|6448
6P5K|1|1|U|6449
6P5K|1|1|U|6450
6P5K|1|1|U|6451
6P5K|1|1|C|6452
6P5K|1|1|C|6453
6P5K|1|1|A|6454
6P5K|1|1|A|6455
6P5K|1|1|U|6456
6P5K|1|1|A|6457
6P5K|1|1|A|6458
6P5K|1|1|A|6459
6P5K|1|1|C|6460
6P5K|1|1|U|6461
6P5K|1|1|C|6462
6P5K|1|1|U|6463
6P5K|1|1|G|6464
6P5K|1|1|G|6465
6P5K|1|1|U|6466

Current chains

Chain 1
IAPV-IRES

Nearby chains

Chain AK
uL1
Chain Ao
eL42

Coloring options:

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