6P5K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6P5K_001 | 1/1/6438:6466 | No text annotation | ||
| HL_6P5K_002 | 1/1/6497:6502 | Mini UNCG | geometric HL_4V9F_021 HL_48778.2 | |
| HL_6P5K_136 | 1/1/6521:6527 | No text annotation | ||
| HL_6P5K_004 | 1/1/6560:6570 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6P5K_005 | 1/1/6583:6592 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_6P5K_006 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6P5K_007 | 1/2/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6P5K_008 | 1/2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6P5K_009 | 1/2/197:202 | GNRA | geometric HL_1G1X_004 HL_37824.7 | |
| HL_6P5K_010 | 1/2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6P5K_012 | 1/2/377:387 | No text annotation | ||
| HL_6P5K_013 | 1/2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6P5K_014 | 1/2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6P5K_015 | 1/2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6P5K_016 | 1/2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6P5K_017 | 1/2/539:544 | GNRA | geometric HL_4C7O_001 HL_37824.7 | |
| HL_6P5K_123 | 1/2/563:592 | No text annotation | ||
| HL_6P5K_018 | 1/2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_6P5K_019 | 1/2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6P5K_021 | 1/2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6P5K_137 | 1/2/885:901 | No text annotation | homologous HL_8CRE_209 HL_99324.1 | |
| HL_6P5K_024 | 1/2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6P5K_025 | 1/2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6P5K_026 | 1/2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6P5K_138 | 1/2/1114:1119 | No text annotation | ||
| HL_6P5K_028 | 1/2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6P5K_029 | 1/2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6P5K_030 | 1/2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6P5K_031 | 1/2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6P5K_032 | 1/2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6P5K_033 | 1/2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6P5K_035 | 1/2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6P5K_036 | 1/2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6P5K_037 | 1/2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6P5K_038 | 1/2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6P5K_040 | 1/2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6P5K_041 | 1/5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6P5K_042 | 1/5/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_6P5K_043 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6P5K_044 | 1/5/131:137 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6P5K_045 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6P5K_046 | 1/5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6P5K_047 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6P5K_048 | 1/5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6P5K_049 | 1/5/314:323 | Pseudoknot geometry | geometric HL_4QLM_002 HL_77600.2 | |
| HL_6P5K_050 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6P5K_051 | 1/5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_6P5K_052 | 1/5/521:641 | No text annotation | ||
| HL_6P5K_053 | 1/5/759:903 | No text annotation | ||
| HL_6P5K_054 | 1/5/962:970 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6P5K_055 | 1/5/1177:1184 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6P5K_056 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6P5K_128 | 1/5/1364:1373 | No text annotation | ||
| HL_6P5K_058 | 1/5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6P5K_059 | 1/5/1405:1412 | No text annotation | geometric HL_8VM9_005 HL_32346.4 | |
| HL_6P5K_060 | 1/5/1436:1448 | Pseudoknot geometry | geometric HL_3IGI_005 HL_93324.4 | |
| HL_6P5K_061 | 1/5/1479:1486 | No text annotation | geometric HL_6VMY_004 HL_53890.2 | |
| HL_6P5K_062 | 1/5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6P5K_063 | 1/5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6P5K_064 | 1/5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6P5K_065 | 1/5/1675:1680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6P5K_066 | 1/5/1760:1773 | No text annotation | ||
| HL_6P5K_067 | 1/5/1816:1823 | T-loop related | geometric HL_3R4F_001 HL_77436.5 | |
| HL_6P5K_068 | 1/5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6P5K_069 | 1/5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6P5K_129 | 1/5/1969:2018 | No text annotation | ||
| HL_6P5K_070 | 1/5/1977:1989 | No text annotation | geometric HL_6D12_001 HL_48417.5 | |
| HL_6P5K_071 | 1/5/2087:2270 | No text annotation | ||
| HL_6P5K_072 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6P5K_073 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6P5K_074 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6P5K_075 | 1/5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6P5K_139 | 1/5/2487:2491 | No text annotation | ||
| HL_6P5K_077 | 1/5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6P5K_078 | 1/5/2561:2566 | GNRA | geometric HL_4ZT0_004 NA | |
| HL_6P5K_079 | 1/5/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6P5K_080 | 1/5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6P5K_081 | 1/5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_6P5K_082 | 1/5/2705:2710 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6P5K_083 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6P5K_084 | 1/5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6P5K_085 | 1/5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6P5K_086 | 1/5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6P5K_131 | 1/5/2899:3600 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_6P5K_088 | 1/5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6P5K_089 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6P5K_090 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6P5K_091 | 1/5/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6P5K_132 | 1/5/3754:3771 | No text annotation | ||
| HL_6P5K_092 | 1/5/3756:3768 | No text annotation | geometric HL_8P9A_160 HL_70658.1 | |
| HL_6P5K_093 | 1/5/3796:3804 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6P5K_094 | 1/5/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6P5K_095 | 1/5/3976:4035 | No text annotation | ||
| HL_6P5K_133 | 1/5/4097:4112 | No text annotation | ||
| HL_6P5K_096 | 1/5/4101:4108 | No text annotation | ||
| HL_6P5K_097 | 1/5/4134:4150 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6P5K_098 | 1/5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6P5K_099 | 1/5/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6P5K_100 | 1/5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6P5K_101 | 1/5/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6P5K_102 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6P5K_103 | 1/5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6P5K_104 | 1/5/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6P5K_105 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6P5K_106 | 1/5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6P5K_107 | 1/5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6P5K_108 | 1/5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6P5K_109 | 1/5/4603:4608 | GNRA | geometric HL_1MZP_001 HL_37824.7 | |
| HL_6P5K_110 | 1/5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6P5K_111 | 1/5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6P5K_140 | 1/5/4775:4860 | No text annotation | ||
| HL_6P5K_134 | 1/5/4890:4929 | No text annotation | ||
| HL_6P5K_113 | 1/5/4904:4918 | No text annotation | ||
| HL_6P5K_114 | 1/5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6P5K_115 | 1/5/5021:5028 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6P5K_135 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6P5K_116 | 1/7/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6P5K_117 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6P5K_118 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6P5K_120 | 1/8/107:112 | No text annotation | homologous HL_8P9A_188 HL_53890.2 | |
| HL_6P5K_121 | 1/8/121:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6P5K_003 | No text annotation | ||
| HL_6P5K_122 | No text annotation | ||
| HL_6P5K_011 | No text annotation | ||
| HL_6P5K_020 | No text annotation | ||
| HL_6P5K_124 | No text annotation | ||
| HL_6P5K_022 | No text annotation | ||
| HL_6P5K_023 | No text annotation | ||
| HL_6P5K_027 | No text annotation | ||
| HL_6P5K_125 | No text annotation | ||
| HL_6P5K_126 | No text annotation | ||
| HL_6P5K_034 | No text annotation | ||
| HL_6P5K_039 | No text annotation | ||
| HL_6P5K_127 | No text annotation | ||
| HL_6P5K_057 | No text annotation | ||
| HL_6P5K_130 | No text annotation | ||
| HL_6P5K_076 | No text annotation | ||
| HL_6P5K_087 | No text annotation | ||
| HL_6P5K_112 | No text annotation | ||
| HL_6P5K_119 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6P5K_256 | 1/1/6424:6437, 1/1/6467:6476 | No text annotation | ||
| IL_6P5K_001 | 1/1/6492:6494, 1/1/6505:6512 | No text annotation | ||
| IL_6P5K_293 | 1/1/6511:6518, 1/1/6530:6535 | No text annotation | ||
| IL_6P5K_002 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_6P5K_003 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6P5K_004 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6P5K_005 | 1/2/41:47, 1/2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6P5K_006 | 1/2/49:51, 1/2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6P5K_007 | 1/2/57:62, 1/2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6P5K_008 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6P5K_009 | 1/2/108:110, 1/2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_28037.2 | |
| IL_6P5K_010 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_6P5K_011 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_6P5K_012 | 1/2/116:121, 1/2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6P5K_014 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6P5K_015 | 1/2/152:154, 1/2/164:166 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_6P5K_016 | 1/2/188:192, 1/2/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6P5K_017 | 1/2/216:219, 1/2/302:309 | No text annotation | ||
| IL_6P5K_294 | 1/2/312:314, 1/2/336:337 | Single bulged A | homologous IL_8P9A_388 IL_31462.6 | |
| IL_6P5K_020 | 1/2/317:320, 1/2/331:333 | No text annotation | homologous IL_4V88_400 NA | |
| IL_6P5K_021 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6P5K_022 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6P5K_023 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6P5K_024 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6P5K_025 | 1/2/459:461, 1/2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6P5K_026 | 1/2/487:489, 1/2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6P5K_027 | 1/2/491:496, 1/2/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_6P5K_295 | 1/2/529:532, 1/2/552:556 | No text annotation | ||
| IL_6P5K_261 | 1/2/533:537, 1/2/546:551 | No text annotation | ||
| IL_6P5K_029 | 1/2/534:537, 1/2/546:550 | No text annotation | ||
| IL_6P5K_030 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6P5K_031 | 1/2/565:569, 1/2/581:585 | No text annotation | geometric IL_4V88_422 NA | |
| IL_6P5K_296 | 1/2/599:608, 1/2/635:637 | No text annotation | ||
| IL_6P5K_033 | 1/2/611:617, 1/2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6P5K_034 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6P5K_035 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_6P5K_036 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6P5K_037 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6P5K_038 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6P5K_039 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6P5K_297 | 1/2/807:815, 1/2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_6P5K_041 | 1/2/877:879, 1/2/907:909 | Isolated non-canonical cWW pair | geometric IL_1MFQ_003 IL_87907.2 | |
| IL_6P5K_042 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6P5K_262 | 1/2/925:926, 1/2/1015:1017 | Single bulged U | geometric IL_2OIU_003 IL_89505.4 | |
| IL_6P5K_298 | 1/2/928:931, 1/2/1010:1013 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
| IL_6P5K_045 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6P5K_299 | 1/2/942:945, 1/2/981:984 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
| IL_6P5K_047 | 1/2/952:956, 1/2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6P5K_048 | 1/2/1042:1047, 1/2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6P5K_049 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6P5K_264 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.1 | |
| IL_6P5K_051 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6P5K_265 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6P5K_052 | 1/2/1101:1103, 1/2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_6P5K_053 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6P5K_054 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6P5K_055 | 1/2/1203:1204, 1/2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6P5K_056 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6P5K_267 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_8C3A_449 NA | |
| IL_6P5K_058 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6P5K_059 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6P5K_300 | 1/2/1281:1287, 1/2/1314:1316 | No text annotation | ||
| IL_6P5K_301 | 1/2/1281:1294, 1/2/1305:1316 | No text annotation | ||
| IL_6P5K_061 | 1/2/1287:1291, 1/2/1308:1314 | No text annotation | ||
| IL_6P5K_269 | 1/2/1287:1294, 1/2/1305:1314 | No text annotation | ||
| IL_6P5K_062 | 1/2/1291:1294, 1/2/1305:1308 | No text annotation | ||
| IL_6P5K_063 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6P5K_270 | 1/2/1328:1332, 1/2/1499:1501 | Isolated non-canonical cWW pair | geometric IL_7LYF_004 IL_57744.1 | |
| IL_6P5K_065 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6P5K_066 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6P5K_067 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6P5K_068 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
| IL_6P5K_069 | 1/2/1395:1399, 1/2/1447:1450 | No text annotation | homologous IL_8C3A_461 NA | |
| IL_6P5K_302 | 1/2/1402:1405, 1/2/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.1 | |
| IL_6P5K_303 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6P5K_072 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_6P5K_273 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_6P5K_073 | 1/2/1550:1558, 1/2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_6P5K_074 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6P5K_075 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6P5K_076 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6P5K_077 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6P5K_078 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6P5K_079 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_6P5K_080 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6P5K_081 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6P5K_082 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6P5K_083 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6P5K_084 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6P5K_085 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_07785.1 | |
| IL_6P5K_086 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6P5K_087 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation | ||
| IL_6P5K_304 | 1/2/1750:1753, 1/2/1779:1784 | No text annotation | ||
| IL_6P5K_088 | 1/2/1751:1754, 1/2/1778:1782 | No text annotation | ||
| IL_6P5K_089 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6P5K_090 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6P5K_091 | 1/5/16:18, 1/8/139:141 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6P5K_092 | 1/5/26:27, 1/5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6P5K_093 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_6P5K_094 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6P5K_095 | 1/5/118:121, 1/5/152:153 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_6P5K_277 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_6P5K_096 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6P5K_097 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6P5K_098 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_6P5K_305 | 1/5/180:189, 1/5/252:256 | No text annotation | ||
| IL_6P5K_100 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6P5K_101 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6P5K_102 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6P5K_103 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6P5K_104 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6P5K_105 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6P5K_106 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_99358.1 | |
| IL_6P5K_107 | 1/5/448:450, 1/5/1297:1298 | No text annotation | ||
| IL_6P5K_306 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6P5K_109 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6P5K_279 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
| IL_6P5K_111 | 1/5/480:485, 1/5/671:674 | No text annotation | ||
| IL_6P5K_112 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6P5K_113 | 1/5/491:493, 1/5/661:662 | No text annotation | ||
| IL_6P5K_307 | 1/5/497:499, 1/5/656:657 | Single bulged C | geometric IL_7A0S_055 IL_61258.15 | |
| IL_6P5K_308 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_1GID_009 NA | |
| IL_6P5K_309 | 1/5/512:520, 1/5/642:647 | No text annotation | ||
| IL_6P5K_117 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | geometric IL_8TSV_002 IL_00225.13 | |
| IL_6P5K_118 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6P5K_119 | 1/5/727:731, 1/5/938:939 | No text annotation | ||
| IL_6P5K_120 | 1/5/732:735, 1/5/927:937 | No text annotation | ||
| IL_6P5K_121 | 1/5/737:742, 1/5/922:925 | No text annotation | ||
| IL_6P5K_122 | 1/5/742:744, 1/5/919:922 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6P5K_281 | 1/5/742:752, 1/5/910:922 | No text annotation | ||
| IL_6P5K_123 | 1/5/745:752, 1/5/910:918 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6P5K_124 | 1/5/1074:1076, 1/5/1234:1236 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 IL_87907.2 | |
| IL_6P5K_125 | 1/5/1077:1081, 1/5/1218:1233 | No text annotation | ||
| IL_6P5K_126 | 1/5/1082:1084, 1/5/1213:1217 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6P5K_127 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_6P5K_128 | 1/5/1096:1099, 1/5/1195:1200 | No text annotation | ||
| IL_6P5K_283 | 1/5/1096:1169, 1/5/1192:1200 | No text annotation | ||
| IL_6P5K_129 | 1/5/1172:1175, 1/5/1186:1189 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6P5K_130 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_6P5K_284 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_6P5K_131 | 1/5/1360:1361, 1/5/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.4 | |
| IL_6P5K_132 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6P5K_133 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_6P5K_134 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6P5K_135 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6P5K_136 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_6P5K_137 | 1/5/1522:1526, 1/5/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_6P5K_138 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_5J7L_262 IL_00225.13 | |
| IL_6P5K_139 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6P5K_140 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6P5K_141 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6P5K_142 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6P5K_143 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6P5K_144 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_6P5K_145 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_6P5K_146 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6P5K_147 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6P5K_148 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_6P5K_149 | 1/5/1739:1744, 1/5/1786:1789 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_6P5K_310 | 1/5/1746:1749, 1/5/1781:1784 | No text annotation | homologous IL_8CRE_044 IL_77658.1 | |
| IL_6P5K_151 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6P5K_311 | 1/5/1753:1756, 1/5/1776:1777 | No text annotation | ||
| IL_6P5K_312 | 1/5/1758:1760, 1/5/1773:1774 | No text annotation | geometric IL_8CRE_012 IL_90729.1 | |
| IL_6P5K_153 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6P5K_154 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6P5K_156 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6P5K_157 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6P5K_158 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_6P5K_159 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_6P5K_160 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6P5K_161 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6P5K_162 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6P5K_163 | 1/5/1957:1966, 1/5/2021:2026 | No text annotation | ||
| IL_6P5K_164 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_6P5K_165 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6P5K_166 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6P5K_167 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6P5K_168 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_6P5K_169 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6P5K_170 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_6P5K_171 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6P5K_172 | 1/5/2477:2482, 1/5/2496:2500 | No text annotation | ||
| IL_6P5K_173 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_6P5K_174 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_6P5K_175 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6P5K_176 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_6P5K_177 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6P5K_178 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_6P5K_179 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.13 | |
| IL_6P5K_180 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_6P5K_181 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_6P5K_182 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6P5K_183 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6P5K_184 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6P5K_286 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6P5K_185 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_4V9F_062 IL_76758.2 | |
| IL_6P5K_186 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6P5K_187 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6P5K_188 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6P5K_189 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6P5K_190 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6P5K_191 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6P5K_192 | 1/5/3704:3705, 1/5/3745:3748 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_6P5K_193 | 1/5/3708:3714, 1/5/3739:3742 | No text annotation | ||
| IL_6P5K_194 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6P5K_195 | 1/5/3754:3756, 1/5/3768:3771 | No text annotation | ||
| IL_6P5K_196 | 1/5/3780:3781, 1/5/3811:3814 | Bulged stacked bases | geometric IL_4V9F_070 IL_22551.4 | |
| IL_6P5K_197 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_6P5K_198 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6P5K_199 | 1/5/3900:3902, 1/5/4558:4561 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6P5K_200 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6P5K_201 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6P5K_202 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6P5K_203 | 1/5/3948:3950, 1/5/4062:4065 | No text annotation | homologous IL_8C3A_101 NA | |
| IL_6P5K_287 | 1/5/3948:3952, 1/5/4060:4065 | No text annotation | ||
| IL_6P5K_204 | 1/5/3950:3952, 1/5/4060:4062 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.3 | |
| IL_6P5K_205 | 1/5/3952:3966, 1/5/4055:4060 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6P5K_288 | 1/5/3968:3973, 1/5/4038:4053 | No text annotation | ||
| IL_6P5K_207 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6P5K_208 | 1/5/4094:4097, 1/5/4112:4114 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6P5K_209 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_6P5K_210 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6P5K_211 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_6P5K_212 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_6P5K_213 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6P5K_214 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6P5K_289 | 1/5/4400:4403, 1/5/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6P5K_215 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_6P5K_216 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6P5K_217 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_6P5K_218 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6P5K_219 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6P5K_220 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6P5K_221 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_6P5K_222 | 1/5/4466:4468, 1/5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6P5K_290 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_6P5K_223 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation | ||
| IL_6P5K_224 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6P5K_225 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_2VPL_002 IL_31462.6 | |
| IL_6P5K_226 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6P5K_227 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6P5K_228 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6P5K_229 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6P5K_230 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_6P5K_231 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6P5K_232 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_6P5K_233 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6P5K_234 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6P5K_235 | 1/5/4740:4746, 1/5/4954:4959 | No text annotation | ||
| IL_6P5K_236 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_6P5K_237 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation | ||
| IL_6P5K_238 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_77658.1 | |
| IL_6P5K_239 | 1/5/4890:4897, 1/5/4923:4929 | No text annotation | ||
| IL_6P5K_240 | 1/5/4897:4904, 1/5/4918:4923 | No text annotation | ||
| IL_6P5K_241 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6P5K_242 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_6P5K_243 | 1/5/4996:4997, 1/5/5053:5055 | No text annotation | ||
| IL_6P5K_244 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6P5K_245 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_6P5K_246 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6P5K_247 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6P5K_248 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6P5K_249 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6P5K_250 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6P5K_251 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6P5K_252 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6P5K_253 | 1/7/79:81, 1/7/95:97 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_6P5K_254 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6P5K_313 | 1/8/64:66, 1/8/92:95 | No text annotation | homologous IL_8P9A_371 IL_07785.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6P5K_257 | No text annotation | ||
| IL_6P5K_013 | No text annotation | ||
| IL_6P5K_258 | No text annotation | ||
| IL_6P5K_018 | No text annotation | ||
| IL_6P5K_019 | Isolated non-canonical cWW pair | ||
| IL_6P5K_259 | No text annotation | ||
| IL_6P5K_028 | No text annotation | ||
| IL_6P5K_260 | No text annotation | ||
| IL_6P5K_032 | No text annotation | ||
| IL_6P5K_040 | No text annotation | ||
| IL_6P5K_043 | Tandem non-canonical cWW pairs | ||
| IL_6P5K_044 | No text annotation | ||
| IL_6P5K_046 | Triple non-canonical cWW pairs | ||
| IL_6P5K_263 | Other IL | ||
| IL_6P5K_050 | No text annotation | ||
| IL_6P5K_266 | No text annotation | ||
| IL_6P5K_057 | C-loop with extra cWW pair | ||
| IL_6P5K_060 | No text annotation | ||
| IL_6P5K_268 | No text annotation | ||
| IL_6P5K_064 | Tandem non-canonical cWW pairs | ||
| IL_6P5K_070 | No text annotation | ||
| IL_6P5K_271 | No text annotation | ||
| IL_6P5K_071 | Isolated non-canonical cWW pair | ||
| IL_6P5K_272 | Tandem non-canonical cWW pairs | ||
| IL_6P5K_274 | No text annotation | ||
| IL_6P5K_275 | No text annotation | ||
| IL_6P5K_276 | No text annotation | ||
| IL_6P5K_099 | No text annotation | ||
| IL_6P5K_278 | Tandem non-canonical cWW pairs | ||
| IL_6P5K_108 | Isolated non-canonical cWW pair | ||
| IL_6P5K_110 | No text annotation | ||
| IL_6P5K_280 | Isolated non-canonical cWW pair | ||
| IL_6P5K_114 | Tandem non-canonical cWW pairs | ||
| IL_6P5K_115 | Isolated non-canonical cWW pair | ||
| IL_6P5K_116 | No text annotation | ||
| IL_6P5K_282 | No text annotation | ||
| IL_6P5K_150 | No text annotation | ||
| IL_6P5K_152 | No text annotation | ||
| IL_6P5K_155 | No text annotation | ||
| IL_6P5K_285 | No text annotation | ||
| IL_6P5K_206 | No text annotation | ||
| IL_6P5K_291 | No text annotation | ||
| IL_6P5K_292 | Isolated non-canonical cWW contact | ||
| IL_6P5K_255 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6P5K_001 | 1/1/6553:6555, 1/1/6575:6577, 1/1/6598:6599 | No text annotation | ||
| J3_6P5K_032 | 1/1/6553:6555, 1/1/6575:6579, 1/1/6596:6599 | No text annotation | ||
| J3_6P5K_002 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6P5K_033 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_6P5K_048 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_56052.5 | |
| J3_6P5K_049 | 1/2/682:684, 1/2/918:923, 1/2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6P5K_004 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6P5K_005 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6P5K_006 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
| J3_6P5K_007 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6P5K_008 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6P5K_009 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6P5K_036 | 1/2/1270:1277, 1/2/1320:1324, 1/2/1504:1512 | No text annotation | ||
| J3_6P5K_010 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6P5K_011 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6P5K_037 | 1/2/1391:1395, 1/2/1450:1457, 1/2/1469:1479 | No text annotation | ||
| J3_6P5K_012 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6P5K_013 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_6P5K_038 | 1/5/196:199, 1/5/215:228, 1/5/240:244 | No text annotation | ||
| J3_6P5K_039 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6P5K_014 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6P5K_040 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6P5K_041 | 1/5/451:455, 1/5/701:705, 1/5/1292:1296 | No text annotation | ||
| J3_6P5K_015 | 1/5/983:985, 1/5/1070:1074, 1/5/1236:1273 | No text annotation | ||
| J3_6P5K_016 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6P5K_017 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6P5K_018 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6P5K_019 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6P5K_020 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6P5K_021 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6P5K_042 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
| J3_6P5K_022 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation | ||
| J3_6P5K_023 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6P5K_043 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_6P5K_024 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_89368.5 | |
| J3_6P5K_025 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | geometric J3_8C3A_009 NA | |
| J3_6P5K_044 | 1/5/4091:4097, 1/5/4112:4129, 1/5/4155:4158 | No text annotation | ||
| J3_6P5K_026 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6P5K_027 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6P5K_045 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_8P9A_063 J3_62630.1 | |
| J3_6P5K_046 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_6P5K_029 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_6P5K_047 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_6P5K_031 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_6P5K_001 | 1/2/30:34, 1/2/521:527, 1/2/558:595, 1/2/641:644 | No text annotation | ||
| J4_6P5K_002 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6P5K_003 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6P5K_004 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6P5K_005 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_6P5K_006 | 1/5/712:713, 1/5/955:961, 1/5/971:978, 1/5/1278:1284 | No text annotation | ||
| J4_6P5K_007 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_6P5K_008 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6P5K_009 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_6P5K_010 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6P5K_011 | 1/5/3696:3698, 1/5/3752:3754, 1/5/3771:3780, 1/5/3814:3819 | No text annotation | ||
| J4_6P5K_012 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_6P5K_013 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J5_6P5K_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6P5K_002 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:461, 1/2/468:474 | No text annotation | ||
| J5_6P5K_009 | 1/2/123:129, 1/2/183:185, 1/2/214:215, 1/2/310:312, 1/2/337:341 | No text annotation | ||
| J5_6P5K_004 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_6P5K_005 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_6P5K_006 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6P5K_007 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_6P5K_008 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6P5K_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_6P5K_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1401, 1/5/1416:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J6_6P5K_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_6P5K_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6P5K_003 | No text annotation | ||
| J3_6P5K_034 | No text annotation | ||
| J3_6P5K_035 | No text annotation | ||
| J3_6P5K_028 | No text annotation | ||
| J3_6P5K_030 | No text annotation | ||
| J5_6P5K_003 | No text annotation |
Coloring options: