HL_6P5K_006

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

6P5K|1|2|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_006 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.1173

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6P5K|1|2|G|7
6P5K|1|2|U|8
6P5K|1|2|U|9
6P5K|1|2|G|10
6P5K|1|2|A|11
6P5K|1|2|U|12
6P5K|1|2|C|13
6P5K|1|2|C|14
6P5K|1|2|U|15
6P5K|1|2|G|16
6P5K|1|2|C|17

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain D

uS5

Chain Y

uS12