HL_6P5K_018

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_018 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1797

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6P5K|1|2|A|569
6P5K|1|2|C|570
6P5K|1|2|U|571
6P5K|1|2|U|572
6P5K|1|2|U|573
6P5K|1|2|A|574
6P5K|1|2|A|575
6P5K|1|2|A|576
6P5K|1|2|U|577
6P5K|1|2|C|578
6P5K|1|2|C|579
6P5K|1|2|U|580
6P5K|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24