3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUUCCCAU
Length
8 nucleotides
Bulged bases
6P5K|1|2|C|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_027 not in the Motif Atlas
Geometric match to HL_361D_002
Geometric discrepancy: 0.3936
The information below is about HL_361D_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6P5K|1|2|A|1113
6P5K|1|2|U|1114
6P5K|1|2|U|1115
6P5K|1|2|C|1116
6P5K|1|2|C|1117
6P5K|1|2|C|1118
6P5K|1|2|A|1119
6P5K|1|2|U|1120

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C
eS1
Chain c
eS27

Coloring options:


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