HL_6P5K_038
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6P5K|1|2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_038 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3332
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6P5K|1|2|G|1658
6P5K|1|2|U|1659
6P5K|1|2|C|1660
6P5K|1|2|A|1661
6P5K|1|2|U|1662
6P5K|1|2|A|1663
6P5K|1|2|A|1664
6P5K|1|2|G|1665
6P5K|1|2|C|1666
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain U
- eS19
- Chain V
- uS10
- Chain e
- eS29
Coloring options: