HL_6P5K_045

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6P5K|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_045 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3093

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5K|1|5|U|204
6P5K|1|5|C|205
6P5K|1|5|U|206
6P5K|1|5|G|207
6P5K|1|5|A|208
6P5K|1|5|U|209
6P5K|1|5|C|210
6P5K|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AY

uL24

Chain Ae

eL32