3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUACGAAAG
Length
9 nucleotides
Bulged bases
6P5K|1|5|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_057 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.26
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6P5K|1|5|C|1363
6P5K|1|5|U|1364
6P5K|1|5|A|1368
6P5K|1|5|C|1369
6P5K|1|5|G|1370
6P5K|1|5|A|1371
6P5K|1|5|A|1372
6P5K|1|5|A|1373
6P5K|1|5|G|1374

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain AC
uL4
Chain AL
eL13
Chain AN
eL15
Chain AY
uL24

Coloring options:


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