HL_6P5K_057
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUACGAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6P5K|1|5|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_057 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.26
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6P5K|1|5|C|1363
6P5K|1|5|U|1364
6P5K|1|5|A|1368
6P5K|1|5|C|1369
6P5K|1|5|G|1370
6P5K|1|5|A|1371
6P5K|1|5|A|1372
6P5K|1|5|A|1373
6P5K|1|5|G|1374
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- uL4
- Chain AL
- eL13
- Chain AN
- eL15
- Chain AY
- uL24
Coloring options: