HL_6P5K_060
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- 6P5K|1|5|C|1437, 6P5K|1|5|U|1438, 6P5K|1|5|U|1440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_060 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.3825
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
6P5K|1|5|C|1436
6P5K|1|5|C|1437
6P5K|1|5|U|1438
6P5K|1|5|U|1440
6P5K|1|5|C|1441
6P5K|1|5|C|1442
6P5K|1|5|A|1443
6P5K|1|5|G|1444
6P5K|1|5|U|1445
6P5K|1|5|C|1446
6P5K|1|5|C|1447
6P5K|1|5|G|1448
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AF
- uL30
- Chain AQ
- eL18
- Chain Ab
- eL29
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