HL_6P5K_066

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCGAAACGAUCU

Length

14 nucleotides

Bulged bases

6P5K|1|5|C|1763, 6P5K|1|5|G|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|1760
6P5K|1|5|G|1761
6P5K|1|5|C|1762
6P5K|1|5|C|1763
6P5K|1|5|G|1764
6P5K|1|5|A|1765
6P5K|1|5|A|1766
6P5K|1|5|A|1767
6P5K|1|5|C|1768
6P5K|1|5|G|1769
6P5K|1|5|A|1770
6P5K|1|5|U|1771
6P5K|1|5|C|1772
6P5K|1|5|U|1773

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AJ

uL11

Chain Q

uS19