3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
Length
40 nucleotides
Bulged bases
6P5K|1|5|C|2094, 6P5K|1|5|A|2107, 6P5K|1|5|G|2113, 6P5K|1|5|U|2267, 6P5K|1|5|C|2269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5K|1|5|C|2087
6P5K|1|5|A|2088
6P5K|1|5|G|2089
6P5K|1|5|U|2090
6P5K|1|5|C|2091
6P5K|1|5|G|2092
6P5K|1|5|G|2093
6P5K|1|5|C|2094
6P5K|1|5|A|2095
6P5K|1|5|G|2096
6P5K|1|5|A|2097
6P5K|1|5|G|2098
6P5K|1|5|C|2099
6P5K|1|5|G|2100
6P5K|1|5|A|2101
6P5K|1|5|G|2102
6P5K|1|5|A|2103
6P5K|1|5|A|2104
6P5K|1|5|A|2105
6P5K|1|5|G|2106
6P5K|1|5|A|2107
6P5K|1|5|G|2108
6P5K|1|5|A|2109
6P5K|1|5|G|2110
6P5K|1|5|U|2111
6P5K|1|5|G|2112
6P5K|1|5|G|2113
6P5K|1|5|C|2258
6P5K|1|5|G|2259
6P5K|1|5|C|2260
6P5K|1|5|G|2261
6P5K|1|5|G|2262
6P5K|1|5|A|2263
6P5K|1|5|C|2264
6P5K|1|5|G|2265
6P5K|1|5|C|2266
6P5K|1|5|U|2267
6P5K|1|5|A|2268
6P5K|1|5|C|2269
6P5K|1|5|G|2270

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AC
uL4
Chain AE
eL6
Chain AF
uL30
Chain AQ
eL18
Chain Ab
eL29
Chain Ae
eL32
Chain Ar
eL28

Coloring options:

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