3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCGGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_072 not in the Motif Atlas
Homologous match to HL_8C3A_030
Geometric discrepancy: 0.0865
The information below is about HL_8C3A_030
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6P5K|1|5|C|2317
6P5K|1|5|G|2318
6P5K|1|5|C|2319
6P5K|1|5|G|2320
6P5K|1|5|G|2321
6P5K|1|5|G|2322

Current chains

Chain 5
28S rRNA

Nearby chains

Chain Ae
eL32
Chain Ar
eL28

Coloring options:


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