HL_6P5K_074
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 6P5K|1|5|G|2421, 6P5K|1|5|U|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_074 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.1734
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6P5K|1|5|A|2420
6P5K|1|5|G|2421
6P5K|1|5|C|2422
6P5K|1|5|A|2423
6P5K|1|5|G|2424
6P5K|1|5|U|2425
6P5K|1|5|U|2426
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AP
- uL22
- Chain AR
- eL19
- Chain Al
- eL39
Coloring options: