HL_6P5K_074

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6P5K|1|5|G|2421, 6P5K|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_074 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1734

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6P5K|1|5|A|2420
6P5K|1|5|G|2421
6P5K|1|5|C|2422
6P5K|1|5|A|2423
6P5K|1|5|G|2424
6P5K|1|5|U|2425
6P5K|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AP

uL22

Chain AR

eL19

Chain Al

eL39