3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
6P5K|1|5|G|2421, 6P5K|1|5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_074 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.1734
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6P5K|1|5|A|2420
6P5K|1|5|G|2421
6P5K|1|5|C|2422
6P5K|1|5|A|2423
6P5K|1|5|G|2424
6P5K|1|5|U|2425
6P5K|1|5|U|2426

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AP
uL22
Chain AR
eL19
Chain Al
eL39

Coloring options:


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