3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAGCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_075 not in the Motif Atlas
Homologous match to HL_5TBW_033
Geometric discrepancy: 0.1873
The information below is about HL_5TBW_033
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6P5K|1|5|C|2458
6P5K|1|5|G|2459
6P5K|1|5|A|2460
6P5K|1|5|G|2461
6P5K|1|5|C|2462
6P5K|1|5|G|2463

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AN
eL15
Chain Aj
eL37

Coloring options:


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