HL_6P5K_077

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6P5K|1|5|U|2530, 6P5K|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_077 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1074

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|G|2523
6P5K|1|5|U|2524
6P5K|1|5|U|2525
6P5K|1|5|C|2526
6P5K|1|5|A|2527
6P5K|1|5|G|2528
6P5K|1|5|A|2529
6P5K|1|5|U|2530
6P5K|1|5|C|2531
6P5K|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain AX

eL23

Chain Ag

eL34