3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUUCAGAUCC
Length
10 nucleotides
Bulged bases
6P5K|1|5|U|2530, 6P5K|1|5|C|2531
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_077 not in the Motif Atlas
Homologous match to HL_5TBW_035
Geometric discrepancy: 0.1074
The information below is about HL_5TBW_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_35087.1
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|G|2523
6P5K|1|5|U|2524
6P5K|1|5|U|2525
6P5K|1|5|C|2526
6P5K|1|5|A|2527
6P5K|1|5|G|2528
6P5K|1|5|A|2529
6P5K|1|5|U|2530
6P5K|1|5|C|2531
6P5K|1|5|C|2532

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AR
eL19
Chain AX
eL23
Chain Ag
eL34

Coloring options:


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