3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUUCUCUUU
Length
9 nucleotides
Bulged bases
6P5K|1|5|U|2631
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_080 not in the Motif Atlas
Homologous match to HL_8C3A_037
Geometric discrepancy: 0.3476
The information below is about HL_8C3A_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6P5K|1|5|G|2624
6P5K|1|5|U|2625
6P5K|1|5|U|2626
6P5K|1|5|C|2627
6P5K|1|5|U|2628
6P5K|1|5|C|2629
6P5K|1|5|U|2630
6P5K|1|5|U|2631
6P5K|1|5|U|2632

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AR
eL19
Chain AU
eL22

Coloring options:


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