HL_6P5K_080

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6P5K|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_080 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3476

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5K|1|5|G|2624
6P5K|1|5|U|2625
6P5K|1|5|U|2626
6P5K|1|5|C|2627
6P5K|1|5|U|2628
6P5K|1|5|C|2629
6P5K|1|5|U|2630
6P5K|1|5|U|2631
6P5K|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain AU

eL22