HL_6P5K_097

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCCGGCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_097 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3502

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|C|4134
6P5K|1|5|G|4135
6P5K|1|5|G|4136
6P5K|1|5|C|4137
6P5K|1|5|C|4138
6P5K|1|5|G|4146
6P5K|1|5|G|4147
6P5K|1|5|C|4148
6P5K|1|5|C|4149
6P5K|1|5|G|4150

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AG

eL8

Chain AZ

eL27