HL_6P5K_098

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6P5K|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_098 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1359

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6P5K|1|5|C|4193
6P5K|1|5|U|4194
6P5K|1|5|G|4195
6P5K|1|5|G|4196
6P5K|1|5|G|4197
6P5K|1|5|G|4198
6P5K|1|5|C|4199
6P5K|1|5|G|4200
6P5K|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AI

uL16

Chain Ab

eL29