HL_6P5K_100

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_100 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1902

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6P5K|1|5|G|4250
6P5K|1|5|A|4251
6P5K|1|5|C|4252
6P5K|1|5|A|4253
6P5K|1|5|G|4254
6P5K|1|5|A|4255
6P5K|1|5|A|4256
6P5K|1|5|A|4257
6P5K|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AJ

uL11