HL_6P5K_107

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_107 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1354

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6P5K|1|5|U|4497
6P5K|1|5|U|4498
6P5K|1|5|G|4499
6P5K|1|5|U|4500
6P5K|1|5|U|4501
6P5K|1|5|C|4502
6P5K|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3