3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUGUUCA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_107 not in the Motif Atlas
Geometric match to HL_5TBW_063
Geometric discrepancy: 0.1354
The information below is about HL_5TBW_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_36430.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

6P5K|1|5|U|4497
6P5K|1|5|U|4498
6P5K|1|5|G|4499
6P5K|1|5|U|4500
6P5K|1|5|U|4501
6P5K|1|5|C|4502
6P5K|1|5|A|4503

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AB
uL3

Coloring options:


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