HL_6P5K_113

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGGAAAGGGGGCC

Length

15 nucleotides

Bulged bases

6P5K|1|5|A|4910, 6P5K|1|5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|4904
6P5K|1|5|C|4905
6P5K|1|5|C|4906
6P5K|1|5|G|4907
6P5K|1|5|G|4908
6P5K|1|5|A|4909
6P5K|1|5|A|4910
6P5K|1|5|A|4911
6P5K|1|5|G|4912
6P5K|1|5|G|4913
6P5K|1|5|G|4914
6P5K|1|5|G|4915
6P5K|1|5|G|4916
6P5K|1|5|C|4917
6P5K|1|5|C|4918

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AM

L14e

Chain AO

uL13